1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttttgtatttagtgagtaatcagtttttcttttgcctagttcatgagctgtcgtctgtttctgacactattctaataaaataatgaaaatggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTC
species | Oryza sativa |
transcript | LOC_Os01g43250.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAG ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTNGT-GAGCTEST: gi|29658632|gb|CB654907.1|CB654907
genomic: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTT-GTTGAGCT
EST: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAG ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTEST: gi|3763201|gb|AU029953.1|AU029953
genomic: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
EST: ATTCAGACTCTCCAAATTTCAACTCTTGTAAG ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTEST: gi|66922346|gb|CX109194.1|CX109194
genomic: ATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
EST: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAA ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTEST: gi|86253118|gb|CI058043.1|CI058043
genomic: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
EST: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAG ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTEST: gi|89181023|gb|CI045106.1|CI045106
genomic: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
EST: TTTGCTATTGGTTTCAATTCAGACTCTCCAAATGTCAACTCTTGTAAG ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTEST: gi|86908206|gb|CI300676.1|CI300676
genomic: TTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
EST: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAG ATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
genomic: GTTTTGCTATTGGTTTCAATTCAGACTCTCCAAATTTCAACTCTTGTAAGgtacgtggaa ... tggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTT
gagctgtcgtctgtttctgacactattctaataaaataatgaaaatggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTC
ttctaat putative branch site (score: 18)
acactattctaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtatttagtgagtaatcagtttttcttttgcctagttcatgagctgtcgtctgtttctgacactattctaataaaataatgaaaatggtgaacagATTTGGGAGTTCGAAGAAGCTCACCAGCGTTGGCTCCCCCTTGTTGAGCTTGGCTCACCTCAGGATAAGGGGGATATAGTGCATGCTGTAGCATGGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - -cttttgc
- - - - - - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - - - -gctgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa