1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ctgcttggtaccgcacttgtgggattaaaatagtcatttatagtataaaaacaattccatttaatgtatttgtcattttgtttccatcacatatttgtagTTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGATGATTATCCCCCAGAGAATGAGCGATATGAACACAGTGAAATGCTTCTG
species | Oryza sativa |
transcript | LOC_Os01g43030.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAA TTCTTCCAAGGCAATAGAAGTATEST: gi|88313578|gb|CI671703.1|CI671703
genomic: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAAgtatgctaac ... atatttgtagTTCTTCCAAGGCAATAGAAGTAT
EST: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAA TTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGEST: gi|88577420|gb|CI674006.1|CI674006
genomic: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAAgtatgctaac ... atatttgtagTTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAG
EST: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTCCCAA TTCTTCCAAGGCAATACAAGTATTGGAGGCATATGAGGGGACEST: gi|58664912|gb|CK053598.1|CK053598
genomic: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAAgtatgctaac ... atatttgtagTTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGAC
EST: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAA TTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGAEST: gi|88393900|gb|CI684164.1|CI684164
genomic: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAAgtatgctaac ... atatttgtagTTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGA
EST: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAA TTCTTCCAAGGCANATAGAAGTATTGGAGGCATATGAGGG
genomic: CACCGCATGAACTGGATTGGTTTTGCTGTAGCTCACCATTTAAGTTCCAAgtatgctaac ... atatttgtagTTCTTCCAAGGCA-ATAGAAGTATTGGAGGCATATGAGGG
taaaaacaattccatttaatgtatttgtcattttgtttccatcacatatttgtagTTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGATGATTATCCCCCAGAGAATGAGCGATATGAACACAGTGAAATGCTTCTG
atttaat putative branch site (score: 12)
atttaatgtatttgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcttggtaccgcacttgtgggattaaaatagtcatttatagtataaaaacaattccatttaatgtatttgtcattttgtttccatcacatatttgtagTTCTTCCAAGGCAATAGAAGTATTGGAGGCATATGAGGGGACACTGGAAGATGATTATCCCCCAGAGAATGAGCGATATGAACACAGTGAAATGCTTCTG
ctgcttg
- - - - - - gcacttg
- - - - - - - - - - - - - - - - - - - - - - ataaaaa