1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaaaaaaactcacagcttgcactgttccattttcgacacattgccctacatggcaatttccttctcataacaccaagtttgtatgtacccttttggaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGCACAGCTTCGCGCCTGACCTCGAGACCAGGATCACCTCATCCTGATCTC
species | Oryza sativa |
transcript | LOC_Os01g40630.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTT-GGGACGATCAGATGCCGEST: gi|23513581|gb|BU673206.1|BU673206
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|29641391|gb|CB646398.1|CB646398
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|88259434|gb|CI363727.1|CI363727
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|18387890|gb|BM421088.1|BM421088
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: CTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|86832981|gb|CI333580.1|CI333580
genomic: CTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCTCCAACTGCCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|33814236|gb|CF332997.1|CF332997
genomic: GCTCCAACTG-CCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|29675216|gb|CB671491.1|CB671491
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|88284481|gb|CI405927.1|CI405927
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: TTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|25798342|gb|CA754303.1|CA754303
genomic: TTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCNACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGEST: gi|29675215|gb|CB671490.1|CB671490
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
EST: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAG GAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
genomic: GCATTATCATCTCGGCTCCAACTGCCAGGGAGCTAGTTCTGAAGCTTGAGgtaaaaaaaa ... gaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCG
tggcaatttccttctcataacaccaagtttgtatgtacccttttggaaatttcagGAGTATGTTCCCGAGTACGAGGTCGGCTTGGTTTGGGACGATCAGATGCCGCACAGCTTCGCGCCTGACCTCGAGACCAGGATCACCTCATCCTGATCTC
tcataac putative branch site (score: 2)
aaatttca TA-rich tract