1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tattgtactcatgtgccagaatttgagctctatcataatcattcacttcgattgccttcttcgtggttttttttcttataaatgttctgtttataaacagGTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTTGTACAGCAGACTGAGGAGCGTCAACTGAAGAAAAAGTCCGACCAAATCG
species | Oryza sativa |
transcript | LOC_Os01g40330.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTAGTCTCTGTGCAGAACTCCAGCGAGCTCTTACAGGATTACCTGAGAAG GTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTTEST: gi|29641100|gb|CB646107.1|CB646107
genomic: GTAGTCTCTGTGCAGAACTCCAGCGAGCTCTTACAGGATTACCTGAGAAGgtagagtaaa ... ttataaacagGTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTT
EST: ACAGGATTACCTGAGAAG GTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTT
genomic: ACAGGATTACCTGAGAAGgtagagtaaa ... ttataaacagGTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTT
cttcgattgccttcttcgtggttttttttcttataaatgttctgtttataaacagGTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTTGTACAGCAGACTGAGGAGCGTCAACTGAAGAAAAAGTCCGACCAAATCG
ttctgttt CT-rich tract
ttttttttcttataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtactcatgtgccagaatttgagctctatcataatcattcacttcgattgccttcttcgtggttttttttcttataaatgttctgtttataaacagGTAGCTGCAGAAGCAATAAAGACTTTTCTGTCAGTTATACACACTATAGTTGTACAGCAGACTGAGGAGCGTCAACTGAAGAAAAAGTCCGACCAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - gtgccag
- - - - - - - - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg