1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacaaattaaactctcagtcaaagataatctgtgcgttataatttagattgcaatgcctgattaattcttcacctgtcctgcgttcagGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAAC
species | Oryza sativa |
transcript | LOC_Os01g38990.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAG GTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGEST: gi|88850057|gb|CI091352.1|CI091352
genomic: TTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGgtacaaatta ... ctgcgttcagGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGG
EST: AAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAG GTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGEST: gi|33381014|gb|CF196357.1|CF196357
genomic: AAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGgtacaaatta ... ctgcgttcagGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGG
EST: TTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAG GTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGG
genomic: TTGGGCAAACCCTCACTTATCCACTGGATGTTGTCCGAAGACAGATGCAGgtacaaatta ... ctgcgttcagGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGG
gcgttataatttagattgcaatgcctgattaattcttcacctgtcctgcgttcagGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAAC
gattaat putative branch site (score: 19)
ttcttcacctgtcct CT-rich tract
ataatttagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaattaaactctcagtcaaagataatctgtgcgttataatttagattgcaatgcctgattaattcttcacctgtcctgcgttcagGTTCAGAATAAGCAGCCCCATAATGCGAACGATGCCTTCCGTATAAGAGGGACATTTCAGGGTCTAGCACTCATTATTAGGTGCCAGGGGTGGAGGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG