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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgatacattcagtctgatcaagtgtaatttcagtggtatgaggtcagttttttttctttaatgtaacaagttcataacaaatagttgcatttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCGCTGTGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAA

Basic information

species Oryza sativa
transcript LOC_Os01g37837.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920929|gb|EG710103.1|EG710103
EST:     CCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAG                         CTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCG
genomic: CCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAGgcaagtcaaa ... catttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCG
EST: gi|33796179|gb|CF323955.1|CF323955
EST:     CCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAG                         CTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCG
genomic: CCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAGgcaagtcaaa ... catttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCG
EST: gi|27577321|gb|CB000016.1|CB000016
EST:     CCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAG                         CTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCG
genomic: CCATGGGAAAATGTGCCCAGTTGGCCCAATTTGACGAAGAGCTTTACAAGgcaagtcaaa ... catttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcagttttttttctttaatgtaacaagttcataacaaatagttgcatttgacagCTAACAGGCGATGGAGAGGAAAAGTATCTCATCGCTACATCCGAGCAACCGCTGTGTGCGTATCATCTAGGTGATCGAATTTATCCTGCTGAATTGCCAA
                             tcataac  putative branch site (score: 2)
     ttttttttctttaatg  TA-rich tract