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gttccactgaaaattgctttgaagtaagttttgaagaaaggaatttcttcttggctaactcatatgttttacttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTGACTGTTGCAACTCGTAATACTTTCGGAGAGCTTGATCAAAGTGTTCGG
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGEST: gi|11025723|gb|AU162324.1|AU162324
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAG
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|29646291|gb|CB651298.1|CB651298
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|29689095|gb|CB685370.1|CB685370
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|58681280|gb|CK069967.1|CK069967
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|33795963|gb|CF323849.1|CF323849
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGGTGTTGACCAAGCCTCCCATAATTEST: gi|29679500|gb|CB675775.1|CB675775
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGG-TGTTGACCAAGCCTCCCATAATT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|29615418|gb|CB620430.1|CB620430
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|29674105|gb|CB670380.1|CB670380
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|3766733|gb|AU030843.1|AU030843
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTEST: gi|29615343|gb|CB620355.1|CB620355
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
EST: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAG TTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
genomic: ACTTTGCAGTGCCTGCATTCTGTTCCAGAGCTGAAGTCAGCTTTATTGAGgttccactga ... acttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTT
aagttttgaagaaaggaatttcttcttggctaactcatatgttttacttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTGACTGTTGCAACTCGTAATACTTTCGGAGAGCTTGATCAAAGTGTTCGG
ggctaac putative branch site (score: 34)
ttttactt putative PPT
atatgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttccactgaaaattgctttgaagtaagttttgaagaaaggaatttcttcttggctaactcatatgttttacttgtgcagTTATTCAGATAATGTGAGGGGTAATGGTGTTGACCAAGCCTCCCATAATTTGACTGTTGCAACTCGTAATACTTTCGGAGAGCTTGATCAAAGTGTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT