Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgatggccgactcttatatttggctataaaatctttgctatcgcgtgtatattgatcctgttctttttatcttcttttgctttgaagGTTGTTGCATTCAATGGTGAGAAGAAAGCTATAAACACATATAACAAGTTCATAAAAAAGGCATATGAATCTGCTCTACAACAAGGTGTTATTAATGGCC

Basic information

species Oryza sativa
transcript LOC_Os01g35030.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g35030.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G086730_T01 (Zea mays), 3'ss of exon 4
-------------------------------gtgagtgatggccgactcttatatttggctataaaatctttgctatcgcg-tgtatattgatcctgttctttttatcttcttttgctttgaagGTTGTTGCATTCAATGGTGAGAAGAAAGCTATAAACACATATAACAAGTTCATAAAAAAGGCATATGAATCTGCTCTACAACAAGGTGTTATTAATGGCC
                               || | ||||    | ||| |   || |  ||  ||   | |  ||||  | |||      | |||  | | | ||||| ||| |||||||||||||||  | ||||||||||||||| | |||||||  ||||||||||||||||||  ||| ||||||||||||||||||||| |||||| | | ||||| |
gttagtgcaactagctagacacttctttgtggttattgatccttgcctccttcgtt-gattagtaataatgtagtatcatgatgttccagtaacctagtttatatatctgcttatgctttgaagGTTGTGTCGTTCAATGGTGAGAAGCAGGCTATAAGAACATATAACAAGTTCATACGAAAAGCATATGAATCTGCTCTACAAGAAGGTGCTGTAAATGGAC

upper sequence: LOC_Os01g35030.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G412276_T01 (Zea mays), 3'ss of exon 3
-----------------gtgagtgatggccgactcttatatttggctataaaatctttgctatcgcgtgta---------tattgatcctgttctt----tttatcttcttttgctt---tgaagGTTGTTGCATTCAATGGTGAGAAGAAAGCTATAAACACATATAACAAGTTCATAAAAAAGGCATATGAATCTGCTCTACAACAAGGTGTTATTAATGGCC
                 |  |    |       | ||   |||| ||||  | |   |   ||| |  |||         |||  |||||| |       |||||||     |||||   ||||||||||| |||||||||| |||||  | |||||||  | |||||||| |||||||| |||||| ||    ||| |||| ||| |||||| | | |||| ||
gtttgtgctattagctagcaaacacttcttccttttttgttttgtctattcatttactatcatcaccagtaacttcctgatatatatcctgcttacctggtttatctgtccatgcttatctgaagGTTGTTTCATTCAATGGCGAGAATCAGGCTATAACAAAATATAACATGTTCATAAGAAAGGCGTACCGGTCTTCTCTGCAAGAAGGTGCTGTAAATGCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgctatcgcgtgtatattgatcctgttctttttatcttcttttgctttgaagGTTGTTGCATTCAATGGTGAGAAGAAAGCTATAAACACATATAACAAGTTCATAAAAAAGGCATATGAATCTGCTCTACAACAAGGTGTTATTAATGGCC
                 tattgat  putative branch site (score: 3)
                       tcctgttctttttatc  CT-rich tract
                               tttttatcttctttt  TA-rich tract