1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttttaatttcatcttctcttaagcttcacaatatttacttgattataaccttttccgtagtgagtgaaagatcaattgctaccacatcctttatgcagGTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGGTCAAATATGTCTATGCGAATGACCTAAACCCCACTGCAGTGGAGTACCT
species | Oryza sativa |
transcript | LOC_Os01g29409.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAAAGACAGAGGCTTGTTGACCATGTTTTCAAAAATTCTGATGTTGTTT GTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGGEST: gi|29618956|gb|CB623968.1|CB623968
genomic: AGAAAGACAGAGGCTTGTTGACCATGTTTTCAAAAATTCTGATGTTGTTTgtaagttcta ... ctttatgcagGTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGG
EST: AGAAAGACAGAGGCTTGTTGACCATGTTTTCAAAAATTCTGATGTTGTTT GTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGG
genomic: AGAAAGACAGAGGCTTGTTGACCATGTTTTCAAAAATTCTGATGTTGTTTgtaagttcta ... ctttatgcagGTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGG
tataaccttttccgtagtgagtgaaagatcaattgctaccacatcctttatgcagGTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGGTCAAATATGTCTATGCGAATGACCTAAACCCCACTGCAGTGGAGTACCT
catccttt CT-rich tract
atcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttaatttcatcttctcttaagcttcacaatatttacttgattataaccttttccgtagtgagtgaaagatcaattgctaccacatcctttatgcagGTGATGTGTTCTCTGGTGTTGGTCCAATAGCAATATCAGCTGCAAGAAAGGTCAAATATGTCTATGCGAATGACCTAAACCCCACTGCAGTGGAGTACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - -catcttc
- - - - - - - - - - - - gcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctacc