1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccatccaaatgagcctgaactgtctttcactaatctgtctaattgtttctactgtatcatacatggtgtcatatgcctttgctgtatattcttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACGCGGGATCGATCTCAAAGGGCAGGACCAGCTCCAGAGGCTAATGCAGAG
species | Oryza sativa |
transcript | LOC_Os01g27020.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACEST: gi|29665377|gb|CB661652.1|CB661652
genomic: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
EST: AGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACEST: gi|29672001|gb|CB668276.1|CB668276
genomic: AGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
EST: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACEST: gi|29688505|gb|CB684780.1|CB684780
genomic: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
EST: AGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACEST: gi|2443097|gb|C74868.1|C74868
genomic: AGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
EST: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACEST: gi|88689180|gb|CI732756.1|CI732756
genomic: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
EST: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACEST: gi|29625908|gb|CB630919.1|CB630919
genomic: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
EST: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAG GCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
genomic: CCACCAAGTAAGGAGATGGATGCTAAGATGAGAGATGAGGAAGCTAGAAGgtttgttggg ... cttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAAC
tttctactgtatcatacatggtgtcatatgcctttgctgtatattcttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACGCGGGATCGATCTCAAAGGGCAGGACCAGCTCCAGAGGCTAATGCAGAG
ttcttattcc CT-rich tract
tgtatattcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatccaaatgagcctgaactgtctttcactaatctgtctaattgtttctactgtatcatacatggtgtcatatgcctttgctgtatattcttattccagGCTACGAGCAGCTGCAAAGGCCAAAGGAGAGGGGGTAAAAAGGACTCGAACGCGGGATCGATCTCAAAGGGCAGGACCAGCTCCAGAGGCTAATGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC