1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgtccaattccaagcatcaaagtaatattgtgcacaacctatgacctaaccgcattaataattttgacagATGGAGGACTTGGAAGCACTATTGCTTCAGTCACCATCTGAAGCTGCTGCAAGATCAACAACGACGCACAGCTCCAAACTTAGCAAAGCTCTTAGCATGA
species | Oryza sativa |
transcript | LOC_Os01g25820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGCACTCATTATGGAAGAGCTTGACCCTACAAACTTGGGATACATCGAG ATGGAGGACTTGGAAGCACTATTGCTTCAGTCACCATCTGAAGCTGCTGCAEST: gi|29635752|gb|CB640761.1|CB640761
genomic: CAGCACTCATTATGGAAGAGCTTGACCCTACAAACTTGGGATACATCGAGgtttgtccaa ... attttgacagATGGAGGACTTGGAAGCACTATTGCTTCAGTCACCATCTGAAGCTGCTGCA
EST: AGCACTCATTATGGAAGAGCTTGACCCTANCAA-CTTGGGATACATCGAG ATGGAGGACTTGGAAG
genomic: AGCACTCATTATGGAAGAGCTTGACCCTA-CAAACTTGGGATACATCGAGgtttgtccaa ... attttgacagATGGAGGACTTGGAAG
atcaaagtaatattgtgcacaacctatgacctaaccgcattaataattttgacagATGGAGGACTTGGAAGCACTATTGCTTCAGTCACCATCTGAAGCTGCTGCAAGATCAACAACGACGCACAGCTCCAAACTTAGCAAAGCTCTTAGCATGA
attaataattttgaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccaattccaagcatcaaagtaatattgtgcacaacctatgacctaaccgcattaataattttgacagATGGAGGACTTGGAAGCACTATTGCTTCAGTCACCATCTGAAGCTGCTGCAAGATCAACAACGACGCACAGCTCCAAACTTAGCAAAGCTCTTAGCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG