1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcacccaaacatttcatgttcttgatctgttactcatcaagtaggcaatttttaggatgaaatgtgctcttatacgactgtacttactgttctattttggaatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACG
species | Oryza sativa |
transcript | LOC_Os01g21970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGCACCTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|10611406|gb|AU108279.1|AU108279
genomic: TCTTGGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: TCATGCTCCTGA GTACGCGATGACAGGGGCAGCTTTACCNCGAAGAGCGATNTCTATAGCTTCEST: gi|86596982|gb|CI270778.1|CI270778
genomic: TCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACA-GGGCAGC-TTAGCACGAAGAGCGATGTCTATAGCTTC
EST: GGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|86595077|gb|CI260316.1|CI260316
genomic: GGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|88998535|gb|CI259868.1|CI259868
genomic: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: CTTGGCACCTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|86593903|gb|CI260132.1|CI260132
genomic: CTTGGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: GTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|10611410|gb|AU108281.1|AU108281
genomic: GTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: GCTTCCANTCCACTCGTGTTCTTGGGCA-CTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGNTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|87029526|gb|CI257321.1|CI257321
genomic: GCCTCCACTCCACTCGTGTTCTT-GGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: CGCCTCCACTCCACTCGTGTTC-TGGCACCTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|10611412|gb|AU108282.1|AU108282
genomic: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: ACTCGTGTTCTTGGGCA-CTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|86493686|gb|CI136319.1|CI136319
genomic: ACTCGTGTTCTT-GGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: CGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|86854455|gb|CI256577.1|CI256577
genomic: CGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: TTATCATGCTCCTGA GTACGCGATGACAGGTCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|58678481|gb|CK067168.1|CK067168
genomic: TTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|10611408|gb|AU108280.1|AU108280
genomic: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: GCCTCCANTCCAATCGTGTTCTTGGGCA-CTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGEST: gi|87024282|gb|CI257023.1|CI257023
genomic: GCCTCCACTCCACTCGTGTTCTT-GGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
EST: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGA GTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
genomic: CGCCTCCACTCCACTCGTGTTCTTGGCACCTTCGGTTATCATGCTCCTGAgtatgcaccc ... aatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGG
gatgaaatgtgctcttatacgactgtacttactgttctattttggaatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACG
tacttac putative branch site (score: 119)
ttctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcacccaaacatttcatgttcttgatctgttactcatcaagtaggcaatttttaggatgaaatgtgctcttatacgactgtacttactgttctattttggaatctgccagGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT