1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttggtgttggcatgctattttattgcctgccaggcactaacgctgacggcggcctgcatgtttctcgtttattttaccaagtaactgttgttgtttctagGTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAGATTGGTGATACTGCTGGAACCATTGACAACATTATTCAATGCAAGCTTT
species | Oryza sativa |
transcript | LOC_Os01g19450.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGAATCAGATACAAAACAACTTATTAGTTATGCACGTGCCAACAACAAG GTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAGEST: gi|58671643|gb|CK060329.1|CK060329
genomic: CTGAATCAGATACAAAACAACTTATTAGTTATGCACGTGCCAACAACAAGgtagggatta ... ttgtttctagGTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAG
EST: CTGAATCAGATACAAAACAACTTATTAGTTATGCACGTGCCAACAACAAG GTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCEST: gi|29624997|gb|CB630008.1|CB630008
genomic: CTGAATCAGATACAAAACAACTTATTAGTTATGCACGTGCCAACAACAAGgtagggatta ... ttgtttctagGTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTC
EST: CTGAATCAGATACAAAACAACTTATTAGTTATGCACGTGCCAACAACAAG GTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAG
genomic: CTGAATCAGATACAAAACAACTTATTAGTTATGCACGTGCCAACAACAAGgtagggatta ... ttgtttctagGTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAG
acggcggcctgcatgtttctcgtttattttaccaagtaactgttgttgtttctagGTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAGATTGGTGATACTGCTGGAACCATTGACAACATTATTCAATGCAAGCTTT
aagtaac putative branch site (score: 2)
ttgtttct putative PPT
tttatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggtgttggcatgctattttattgcctgccaggcactaacgctgacggcggcctgcatgtttctcgtttattttaccaagtaactgttgttgtttctagGTAATCATTGGACCAGCAACAGTTGGAGGAATCCAAGCTGGTGCTTTCAAGATTGGTGATACTGCTGGAACCATTGACAACATTATTCAATGCAAGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT