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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaggaacgtaaaatacatcctgattgatggaatgtgcatttgaaaaatgttttgcaatcacagtacagcttacatatttgccttttctactgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGTATGGAATGCAAACAAGTTGTGCGGGACTACGGGGACATGATCCTCGAGA

Basic information

species Oryza sativa
transcript LOC_Os01g18630.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86596608|gb|CI286521.1|CI286521
EST:     GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
EST: gi|86904214|gb|CI306632.1|CI306632
EST:     GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
EST: gi|29670409|gb|CB666684.1|CB666684
EST:     GTTGCGCCGCTATTGCGGATTCAAGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGT
EST: gi|25797199|gb|CA753160.1|CA753160
EST:     GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACA                         ACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTG
genomic: GTTGCGCCGCTATTGCGGATTCAGGGACTTCATTGCTCGGTGGCCCAACAgtatgtaacc ... ctgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgttttgcaatcacagtacagcttacatatttgccttttctactgctgtcagACTATTGTTGCTCAAATTAATCACGCAATTGGAGCTGAGGGAATTGTTAGTATGGAATGCAAACAAGTTGTGCGGGACTACGGGGACATGATCCTCGAGA
                      agcttac  putative branch site (score: 3)
                                tttgccttttctact  putative PPT
                         ttacatattt  TA-rich tract