1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacatatttagcttcaatccatttaattcaagcgttccatgagaatagatgacacatgttccttctatagctcaataatgttttttttacactcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGA
species | Oryza sativa |
transcript | LOC_Os01g16340.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATG GGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCEST: gi|38474957|gb|CF959090.1|CF959090
genomic: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGgtacatactg ... actcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGC
EST: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATG GGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCEST: gi|29660968|gb|CB657243.1|CB657243
genomic: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGgtacatactg ... actcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGC
EST: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATG GGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCEST: gi|86544875|gb|CI185081.1|CI185081
genomic: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGgtacatactg ... actcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGC
EST: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATG GGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCEST: gi|88979388|gb|CI025890.1|CI025890
genomic: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGgtacatactg ... actcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGC
EST: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATG GGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGC
genomic: AATCTTGTTCCCGGACAAGGCCCTGTCCCTGAATAGGAAGAAACATCATGgtacatactg ... actcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGC
tagatgacacatgttccttctatagctcaataatgttttttttacactcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGA
ttttttttacactc CT-rich tract
tcaataatgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacatatttagcttcaatccatttaattcaagcgttccatgagaatagatgacacatgttccttctatagctcaataatgttttttttacactcatgcagGGCGAGCAGAGGCCCTTTTGTTAGCGGCCTACGGAAAAGGTCTTGTGCTGCCATCAGGGGAGTTCAGCAAAACATTATGACAATCCGACTTTTATAGGGA
- - - - -agcttca
- - - - - - - - - - - - - - - - - ttccatg
- - - - - - - - - - - - - - - - - - - - -agaataga