Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttaaggttgattcaaccataggccagattgacttgaaattgtcaggcagctttaactttttccatctctcctaattatatatattctgttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGCCCAAGGTTATTGGGGAAATCAGAAACAATAGCCACCTAGGTGCAACCG

Basic information

species Oryza sativa
transcript LOC_Os01g16170.4
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29663778|gb|CB660053.1|CB660053
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29677835|gb|CB674110.1|CB674110
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29639705|gb|CB644714.1|CB644714
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29679456|gb|CB675731.1|CB675731
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29630352|gb|CB635361.1|CB635361
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29629095|gb|CB634106.1|CB634106
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29616200|gb|CB621212.1|CB621212
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29672767|gb|CB669042.1|CB669042
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29677585|gb|CB673860.1|CB673860
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|58587497|gb|CF985805.1|CF985805
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGG
EST: gi|29681319|gb|CB677594.1|CB677594
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29624849|gb|CB629860.1|CB629860
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29663859|gb|CB660134.1|CB660134
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAAAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29641024|gb|CB646031.1|CB646031
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29678251|gb|CB674526.1|CB674526
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
EST: gi|29664792|gb|CB661067.1|CB661067
EST:     GCCACATATATCACCGTCTTAAAGCNNNNNNNGCCAGGGCAACAAGCAAG                         CCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG
genomic: GCCACATATATCACCGTCTTAAAGCAAAAAAAGCCAGGGCAACAAGCAAGgtgactgcat ... ttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcagctttaactttttccatctctcctaattatatatattctgttatttgcagCCTCAGAGGCATCAGCGTGCTGATGCTTCATTGAGAGAAAAGCTTTTGGGGCCCAAGGTTATTGGGGAAATCAGAAACAATAGCCACCTAGGTGCAACCG
                         tcctaat  putative branch site (score: 2)
                                        ttctgtt  putative PPT
                            taattatatatattct  TA-rich tract