1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtgtttaagtgttaagcaaacaatcagatgggacaaaataattgacacatgccatgatggagtcttctcattgtggttttaactcttctattttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTGGACCTGTGTACGGCATGGGGCACCATGGATCTTCCTCTACAATTGCTT
species | Oryza sativa |
transcript | LOC_Os01g15460.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCG GCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTEST: gi|88688504|gb|CI732080.1|CI732080
genomic: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCGgtaattgatt ... ttttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCT
EST: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCG GCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTEST: gi|700077|gb|D46368.1|D46368
genomic: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCGgtaattgatt ... ttttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCT
EST: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCG GCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTEST: gi|700558|gb|D46849.1|D46849
genomic: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCGgtaattgatt ... ttttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCT
EST: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCG GCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTEST: gi|700012|gb|D46303.1|D46303
genomic: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCGgtaattgatt ... ttttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCT
EST: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCG GCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCT
genomic: TGATGCTCTCATCTGGAATGATCCCATTGCAAGGATGGAGCCCTTATCCGgtaattgatt ... ttttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCT
cacatgccatgatggagtcttctcattgtggttttaactcttctattttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTGGACCTGTGTACGGCATGGGGCACCATGGATCTTCCTCTACAATTGCTT
ttttaac putative branch site (score: 23)
ctcttctattttat CT-rich tract
ttttaactcttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttaagtgttaagcaaacaatcagatgggacaaaataattgacacatgccatgatggagtcttctcattgtggttttaactcttctattttatacagGCTTCGGTAAACCCTGTAGTGTCAGGTGGAGCTCAACAAAATGTTCAAGCTGGACCTGTGTACGGCATGGGGCACCATGGATCTTCCTCTACAATTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - -gcaaaca
- - - - - - - - - - - - - - - ggacaaa
- - - - - - - - - - - - - - - - - - - - - - -cacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - catgatg