1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatcagtattgtttgtctgtttgtatctttatttctcactcttgtctcttgtgacaaattaactgatattggctccatattctcctctcttgcacctcagGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGG
species | Oryza sativa |
transcript | LOC_Os01g11980.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTG GTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATEST: gi|88519905|gb|CI446457.1|CI446457
genomic: AAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGgtaagcctcc ... tgcacctcagGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGAT
EST: AAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTG GTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATEST: gi|33660828|gb|CF291795.1|CF291795
genomic: AAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGgtaagcctcc ... tgcacctcagGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGAT
EST: AAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTG GTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGAT
genomic: AAGGTTCTAACATTGATTGCAATCATATGCGAGATCTGTGCTCTGTTCTGgtaagcctcc ... tgcacctcagGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGAT
ctcttgtgacaaattaactgatattggctccatattctcctctcttgcacctcagGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGG
ctccatattctcctct CT-rich tract
aaattaactgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatcagtattgtttgtctgtttgtatctttatttctcactcttgtctcttgtgacaaattaactgatattggctccatattctcctctcttgcacctcagGTATAGTTTGAGCTACATCCCTTTCGCTCGGCGAATGGTGTCTGACCTGATGGTGAAGCTCTGTGACACTGAACTTTGACCTGATGGTGAAGTTCATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -tgtttgt
- - - - - - - - ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - -cttgtga