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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgcatctacacaaaatagtgtatagcaatttgcaggtacaatttatgccttgaacataacagaacattgtgttattgatactttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAATGCATCGGGCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g09120.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660689|gb|CB656964.1|CB656964
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29660992|gb|CB657267.1|CB657267
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|88221282|gb|CI221238.1|CI221238
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|86505958|gb|CI148591.1|CI148591
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29657673|gb|CB653948.1|CB653948
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29680769|gb|CB677044.1|CB677044
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|88966127|gb|CI013003.1|CI013003
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29662742|gb|CB659017.1|CB659017
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|86527492|gb|CI167698.1|CI167698
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|88461305|gb|CI547485.1|CI547485
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGGTCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|87027196|gb|CI278228.1|CI278228
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|31818552|gb|CD645551.1|CD645551
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29640574|gb|CB645583.1|CB645583
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29655805|gb|CB652080.1|CB652080
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTATTAAAATACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTGTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|14571448|gb|BI118816.1|BI118816
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|38474285|gb|CF958417.1|CF958417
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|86869605|gb|CI322091.1|CI322091
EST:     CGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCATTATCTTCTACATATATCTCCTATACGAAA
genomic: CGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|88228766|gb|CI228246.1|CI228246
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATTTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29660961|gb|CB657236.1|CB657236
EST:     CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTCCAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
EST: gi|29638115|gb|CB643124.1|CB643124
EST:     CAACATATTTGTTTTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAG                         GAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA
genomic: CAACATATTTGTTCTGAGCAAGCTTGCACGGTTCATCTACTAAACTACAGgttcgcatct ... tttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaatttatgccttgaacataacagaacattgtgttattgatactttctaacagGAAAGGTGGAAGCTCGTTCCGTGATCTTCTACATATATCTCCTATACGAAATGCATCGGGCAAG
                                    tattgat  putative branch site (score: 3)
                                          tactttct  CT-rich tract
                                   ttattgata  TA-rich tract