1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttggccacatgatccaaccgctattttctgcaaagtattggccatcttgtccctttcattaaactaattcatcctatcttgtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGTTGAATGAAATTGATCGTTATGCAAGTGACAATGTAAACAAGCTCCTTG
species | Oryza sativa |
transcript | LOC_Os01g08450.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATT ATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGEST: gi|218494557|gb|FG953581.1|FG953581
genomic: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATTgtaagttggc ... gtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGG
EST: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATT ATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGEST: gi|33797391|gb|CF324558.1|CF324558
genomic: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATTgtaagttggc ... gtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGG
EST: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATT ATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGEST: gi|163921221|gb|EG710173.1|EG710173
genomic: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATTgtaagttggc ... gtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGG
EST: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATT ATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGG
genomic: GTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATTgtaagttggc ... gtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGG
tattggccatcttgtccctttcattaaactaattcatcctatcttgtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGTTGAATGAAATTGATCGTTATGCAAGTGACAATGTAAACAAGCTCCTTG
aactaat putative branch site (score: 55)
tttcattaaactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggccacatgatccaaccgctattttctgcaaagtattggccatcttgtccctttcattaaactaattcatcctatcttgtgcatgcagATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGTTGAATGAAATTGATCGTTATGCAAGTGACAATGTAAACAAGCTCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT