1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tattctgtagcatctcatgttcatactgtgttttcccctttatatgcttgtctatctgtctagtttagaggctatttgatgtgacccttttgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCC
species | Oryza sativa |
transcript | LOC_Os01g08200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACEST: gi|701567|gb|D47858.1|D47858
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
EST: TAGCGCAG-ATTTGTCACATTTTGGTATTGATTTNTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAA-GAGAGCTTTATCACAACACAAATTATEST: gi|33677994|gb|CF306233.1|CF306233
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTAT
EST: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACEST: gi|58663886|gb|CK052572.1|CK052572
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
EST: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACEST: gi|29622184|gb|CB627195.1|CB627195
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
EST: TATCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGATAGCTTGATCACAACACAAATTATGACEST: gi|58693785|gb|CK082472.1|CK082472
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
EST: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACEST: gi|33674839|gb|CF303078.1|CF303078
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
EST: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACEST: gi|58661919|gb|CK050599.1|CK050599
genomic: TAGCGCAGCATTTGTCACATTTTGGTATTGATTTTTCTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
EST: CTTCACTCCAAAAG ACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
genomic: CTTCACTCCAAAAGgtgagtagta ... tgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGAC
gcttgtctatctgtctagtttagaggctatttgatgtgacccttttgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCC
atttgat putative branch site (score: 37)
cccttttgtt putative PPT
tatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattctgtagcatctcatgttcatactgtgttttcccctttatatgcttgtctatctgtctagtttagaggctatttgatgtgacccttttgttgtgcagACCGAGATGACTACTGCTGAAAGAGAGCTTGATCACAACACAAATTATGACTGGAATAGAATACAAGAAAGTGGCAAAGATGCCGAACTTTTATACGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ctgtagc
- - - - - - - -catgttc
- - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - -atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgt