1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttaagagaagctcccattgtttttttgtggttttacgttttgattgacaatttggggctacgatgtattgcttacaattatgcacttgtcgtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGTTTTCCCAACAT
species | Oryza sativa |
transcript | LOC_Os01g07540.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATACAEST: gi|95101518|gb|CI697037.1|CI697037
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACA
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATEST: gi|88581732|gb|CI698935.1|CI698935
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTAT
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATEST: gi|88442766|gb|CI693772.1|CI693772
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTAT
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATEST: gi|88352861|gb|CI678889.1|CI678889
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTAT
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATEST: gi|88579450|gb|CI688438.1|CI688438
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTAT
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATEST: gi|27548609|gb|CA766815.2|CA766815
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTAT
EST: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAG GAAAAATATA--GGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCAT
genomic: AACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGgtaagactat ... gtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTAT
gacaatttggggctacgatgtattgcttacaattatgcacttgtcgtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGTTTTCCCAACAT
tgcttac putative branch site (score: 2)
ttacaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagagaagctcccattgtttttttgtggttttacgttttgattgacaatttggggctacgatgtattgcttacaattatgcacttgtcgtgtcatcagGAAAAATATACAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTTTATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGTTTTCCCAACAT
- - - - -gctccca
- - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - tggggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgca