1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaggatatatttggtttcagttgctcaaatttcgttgaaactgtgatgtatgtgttttagtaaaatcaaaacatgcttgctttattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAGTACAG
species | Oryza sativa |
transcript | LOC_Os01g05830.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAAT TATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAEST: gi|33655950|gb|CF278564.1|CF278564
genomic: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATgtaaggatat ... tattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCA
EST: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAAT TATCTCCTTGAAGAGGTTGCTTCAGTCCCAGATCAACTGAGTAAGATATCAEST: gi|117251249|gb|CT844083.1|CT844083
genomic: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATgtaaggatat ... tattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCA
EST: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAAT TATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAEST: gi|29616435|gb|CB621447.1|CB621447
genomic: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATgtaaggatat ... tattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCA
EST: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAAT TATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCA
genomic: GATTGACATCCAAACCAATACAAGACACTTTCTCTCATTATATAATgtaaggatat ... tattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCA
aaactgtgatgtatgtgttttagtaaaatcaaaacatgcttgctttattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAGTACAG
cttgcttt CT-rich tract
ttttagtaaaatcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggatatatttggtttcagttgctcaaatttcgttgaaactgtgatgtatgtgttttagtaaaatcaaaacatgcttgctttattaaacagTATCTCCTTGAAGAGGTTGCTTTAGTCCCAGATCAACTGAGTAAGATATCAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA