1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagacacctcattatcttcccacttttttgtgctgtttggtacaagcattctccatgaaattcaccgatgccatttctttttgcagAGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGACAAAGCATATGCTGTTAGTGAAATACTGAATGTTGAAGAGATTAGCCTT
species | Oryza sativa |
transcript | LOC_Os01g04490.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTTTAGACGAACTGGACATGCCTCCAAAGCAAAGCTTCTGTGAATCACT AGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGAEST: gi|29670725|gb|CB667000.1|CB667000
genomic: GCTTTAGACGAACTGGACATGCCTCCAAAGCAAAGCTTCTGTGAATCACTgtaagacacc ... ctttttgcagAGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGA
EST: GCTTTAGACGAACTGGACATGCCTCCAAAGCAAAGCTTCTGTGAATCACT AGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGAEST: gi|29670726|gb|CB667001.1|CB667001
genomic: GCTTTAGACGAACTGGACATGCCTCCAAAGCAAAGCTTCTGTGAATCACTgtaagacacc ... ctttttgcagAGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGA
EST: GCTTTAGACGAACTGGACATGCCTCCAAAGCAAAGCTTCTGTGAATCACT AGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGA
genomic: GCTTTAGACGAACTGGACATGCCTCCAAAGCAAAGCTTCTGTGAATCACTgtaagacacc ... ctttttgcagAGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGA
gctgtttggtacaagcattctccatgaaattcaccgatgccatttctttttgcagAGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGACAAAGCATATGCTGTTAGTGAAATACTGAATGTTGAAGAGATTAGCCTT
tgccatttcttttt CT-rich tract
atttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacacctcattatcttcccacttttttgtgctgtttggtacaagcattctccatgaaattcaccgatgccatttctttttgcagAGAACATCCGGTTCACAAGTTAAATGCGGAAAGCACAAGCTCTGCTACTGACAAAGCATATGCTGTTAGTGAAATACTGAATGTTGAAGAGATTAGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA