1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgtattttgttgttaatatgatcataatagcatgatagtaagttctcatgttgatttaacttttgcatacatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTATTATGATGGGGACCTCCACTCAGCAAGAAGCTATTATGCGCGTTCGTTGG
species | Oryza sativa |
transcript | LOC_Os01g01420.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTATEST: gi|218483541|gb|FG956377.1|FG956377
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAGgttgtatttt ... acatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTAT
EST: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTATEST: gi|163927593|gb|EG709977.1|EG709977
genomic: ATGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCAAAAAAGATCTGGAGgttgtatttt ... acatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTAT
EST: TGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCCNNNNNNNGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTATEST: gi|29637602|gb|CB642611.1|CB642611
genomic: TGAAGAAAGTGCTGAATTCCTCTCGAAATTGCCC-AAAAAAGATCTGGAGgttgtatttt ... acatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTAT
EST: ATTGCCCAAAAAAGATCTGGAG TTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTAT
genomic: ATTGCCCAAAAAAGATCTGGAGgttgtatttt ... acatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTAT
ataatagcatgatagtaagttctcatgttgatttaacttttgcatacatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTATTATGATGGGGACCTCCACTCAGCAAGAAGCTATTATGCGCGTTCGTTGG
atttaac putative branch site (score: 3)
ttgatttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtattttgttgttaatatgatcataatagcatgatagtaagttctcatgttgatttaacttttgcatacatctacagTTGGTCCATACTCTCTCAGTTTCACTAAATAAAATTGGAGATCTTCGCTATTATGATGGGGACCTCCACTCAGCAAGAAGCTATTATGCGCGTTCGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC