1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaattgcctagcttgttgccatgccttcattcttcctgggaccattgcagggctggagataataatctatctactgtcgttgtttcttgaacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATCGTATCTTCAACCAGACAAGGAATCCGATTTCGATGCAGAGCTTAATTT
species | Oryza sativa |
transcript | LOC_Os01g01350.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAG AACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATEST: gi|163926062|gb|EG715018.1|EG715018
genomic: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAGgtatggacgc ... aacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCAT
EST: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAG AACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATEST: gi|33803103|gb|CF327422.1|CF327422
genomic: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAGgtatggacgc ... aacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCAT
EST: AGAAGCTACAACATCCCCTGACGATGTTGATGAGGAAGAACTAATGGGAG AACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATEST: gi|163920256|gb|EG714441.1|EG714441
genomic: AGAAGCTACAACAT-CCCTGACGATGTTGATGAGGAAGAACTAATGGGAGgtatggacgc ... aacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCAT
EST: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAG AACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATEST: gi|86511478|gb|CI154111.1|CI154111
genomic: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAGgtatggacgc ... aacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCAT
EST: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAG AACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCAT
genomic: TAGAAGCTACAACATCCCTGACGATGTTGATGAGGAAGAACTAATGGGAGgtatggacgc ... aacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCAT
ttgcagggctggagataataatctatctactgtcgttgtttcttgaacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATCGTATCTTCAACCAGACAAGGAATCCGATTTCGATGCAGAGCTTAATTT
ataataatctatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaattgcctagcttgttgccatgccttcattcttcctgggaccattgcagggctggagataataatctatctactgtcgttgtttcttgaacattgcagAACTGGATGCTTTGGAGGCTGATATGGAGTTTGAGTCAAGTGCAGTCCCATCGTATCTTCAACCAGACAAGGAATCCGATTTCGATGCAGAGCTTAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -tgcctag
- - - - - - - tgttgcc
- - - - - - - - - - - tgccttc
- - - - - - - - - - - - - - - - -ttcctgg
- - - - - - - - - - - - - - - - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - gctggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctactg