1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' |
gtgaatgacaattgccgccgctgtcatttattttatggacttaccaattctcactcatgtatttctttaatgtaatgatggtttagtgtgtctctattactcactcattcagcaattatattgttgaaaactacttgaccgaaggtggtatatttaatttctcaccttcacttgtatccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGCAAAACGAAGCAAATATTGCTGGGACTCGTTACAATGTACCTCTTGTTA
species | Oryza sativa |
transcript | LOC_Os10g40780.3 |
intron # | 44 |
splice site | 3' |
intron type | U2 |
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGEST: gi|9886370|gb|BE607462.1|BE607462
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGEST: gi|428676|gb|D24828.1|D24828
genomic: GCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGEST: gi|58681156|gb|CK069843.1|CK069843
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGEST: gi|428473|gb|D24623.1|D24623
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAAGCAGGAGTTACTTCTGCCEST: gi|29674319|gb|CB670594.1|CB670594
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAA-GCAGAAGTTACTTCTGCC
EST: TTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACTTCAAG AGGCCAGATGGATCCTTTTTAACTGA-TTAAAGCAGAAGTTACTTCTGCCGEST: gi|163928760|gb|EG711897.1|EG711897
genomic: TTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGEST: gi|428499|gb|D24650.1|D24650
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAG
EST: GTGCCTTAAAGTCAAAGCAAATGNAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGANGTTACTTCTGCCGEST: gi|58677103|gb|CK065790.1|CK065790
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGEST: gi|428675|gb|D24827.1|D24827
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
EST: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAG AGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
genomic: GTGCCTTAAAGTCAAAGCAAATGAAGACACAGGTTGATGAGTACCTCAAGgtgaatgaca ... atccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCG
ctacttgaccgaaggtggtatatttaatttctcaccttcacttgtatccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGCAAAACGAAGCAAATATTGCTGGGACTCGTTACAATGTACCTCTTGTTA
ttctcac putative branch site (score: 13)
tatatttaatttctca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaatgacaattgccgccgctgtcatttattttatggacttaccaattctcactcatgtatttctttaatgtaatgatggtttagtgtgtctctattactcactcattcagcaattatattgttgaaaactacttgaccgaaggtggtatatttaatttctcaccttcacttgtatccgcgcagAGGCCAGATGGATCCTTTTTAACTGATTTAAAGCAGAAGTTACTTCTGCCGCAAAACGAAGCAAATATTGCTGGGACTCGTTACAATGTACCTCTTGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA