1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' | 51 5' 3' |
gtttgtatcttcattttcatgctcagtttagttgctacttgttcttttctaatggtcatacttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGCCTTTAGACCCTTCAAGATGGCCATCCCCTACACCACCAGAGTCCCTCG
species | Oryza sativa |
transcript | LOC_Os01g60040.1 |
intron # | 44 |
splice site | 3' |
intron type | U2 |
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|33679052|gb|CF307291.1|CF307291
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|300216015|gb|HO088641.1|HO088641
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|58673525|gb|CK062211.1|CK062211
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|88571710|gb|CI663083.1|CI663083
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|163921634|gb|EG714160.1|EG714160
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|58587630|gb|CF985938.1|CF985938
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|29680245|gb|CB676520.1|CB676520
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|58667817|gb|CK056503.1|CK056503
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGEST: gi|58673773|gb|CK062459.1|CK062459
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
EST: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTG GATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
genomic: ATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatct ... cttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGG
ttcatgctcagtttagttgctacttgttcttttctaatggtcatacttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGCCTTTAGACCCTTCAAGATGGCCATCCCCTACACCACCAGAGTCCCTCG
ttctaat putative branch site (score: 28)
ttttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatcttcattttcatgctcagtttagttgctacttgttcttttctaatggtcatacttggagcagGATAATGCTGAGAGAACATCCTCATTCGTTGTGCTTATTAATTTGCTGAGGCCTTTAGACCCTTCAAGATGGCCATCCCCTACACCACCAGAGTCCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG