1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagtgcatatcaagttttatttctacatacaaattagctcctttgggtttgattttaagttggggtttaatttaagttggatatcagttactgacagaacagtgaaatataatatattttttgttttgaattgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATGTCGCCATCAAAAACGGATGGATCATCATCAGATGCAACAATCTATCTA
species | Oryza sativa |
transcript | LOC_Os12g40890.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG CACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATEST: gi|86900552|gb|CI298387.1|CI298387
genomic: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcat ... attgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
EST: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG CACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATEST: gi|29658630|gb|CB654905.1|CB654905
genomic: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcat ... attgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
EST: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG CACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATEST: gi|58683236|gb|CK071923.1|CK071923
genomic: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcat ... attgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
EST: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG CACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATEST: gi|29681969|gb|CB678244.1|CB678244
genomic: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcat ... attgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
EST: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG CACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATEST: gi|38481977|gb|CF966041.1|CF966041
genomic: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcat ... attgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
EST: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTG CGCGGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
genomic: ATCATGCAAGCGCCTTAGGATAATGAAAGGATCAGAAGCTATTGGCCTTGgtcagtgcat ... attgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACAT
cagttactgacagaacagtgaaatataatatattttttgttttgaattgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATGTCGCCATCAAAAACGGATGGATCATCATCAGATGCAACAATCTATCTA
tactgac putative branch site (score: 2)
ttgtttc putative PPT
agtgaaatataatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgcatatcaagttttatttctacatacaaattagctcctttgggtttgattttaagttggggtttaatttaagttggatatcagttactgacagaacagtgaaatataatatattttttgttttgaattgtttcagCACCGAGGGCAATGGAGAAATGCAAGAACAGAAGCTGAGAAAGAAGAACATGTCGCCATCAAAAACGGATGGATCATCATCAGATGCAACAATCTATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG