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...ttaactgtattgccacacatttgaggaaacagctgaagctttgatatgctaggttggttgctcttttgtgatgaaacaaactcttgtttgtatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG
species | Oryza sativa |
transcript | LOC_Os12g40550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTTGGTGTCCT-GGTGCTCTTGAGGCAATTAGAATGCTGAAAAG GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAEST: gi|33797319|gb|CF324522.1|CF324522
genomic: GGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAGgtgtaaatac ... tatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
EST: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAG GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAEST: gi|33799214|gb|CF325465.1|CF325465
genomic: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAGgtgtaaatac ... tatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
EST: GGGTGGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAG GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAEST: gi|58656010|gb|CK044690.1|CK044690
genomic: GGGTGG-TTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAGgtgtaaatac ... tatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
EST: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAG GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAEST: gi|25801425|gb|CA757386.1|CA757386
genomic: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAGgtgtaaatac ... tatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
EST: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAG GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAEST: gi|32948123|gb|BP184695.1|BP184695
genomic: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAGgtgtaaatac ... tatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
EST: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAG GTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
genomic: GGGGTGGTTGGTGTCCTGGGTGCTCTTGAGGCAATTAGAATGCTGAAAAGgtgtaaatac ... tatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGA
atgctaggttggttgctcttttgtgatgaaacaaactcttgtttgtatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG
aaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaactgtattgccacacatttgaggaaacagctgaagctttgatatgctaggttggttgctcttttgtgatgaaacaaactcttgtttgtatcatacagGTCTGGTTTCCAGCCAAAAAGATCTTTGGAGGTTATTATGTTTACATCGGAGGAGCCTACAAGATTTGGAATTAGCTGCTTGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -ttgccac
- - - - - - - - acatttg
- - - - - - - - - - - - -gaaacag
- - - - - - - - - - - - - - - - ctgaagc
- - - - - - - - - - - - - - - - - - - - - - tatgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg