1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attctaactgcatcatttattttttcaatctacctcatttttttcctgaaagatttgtagttgtgcaaatttattctaacttgcactttgtgaaatgcagTTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTCCAGCGGGACTTGTCATCACTTTGGGATATTGATCTAGGTGGGAAGGTAA
species | Oryza sativa |
transcript | LOC_Os12g38930.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCCAACATATACTTCAGTGCTCAATCATATTCGAATATACTTGCCTGAG TTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTCEST: gi|58678185|gb|CK066872.1|CK066872
genomic: GTCCAACATATACTTCAGTGCTCAATCATATTCGAATATACTTGCCTGAGgtacaataat ... tgaaatgcagTTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTC
EST: GTCCAACATATACTTCAGTGCTCAATCATATTCGAATATACTTGCCTGAG TTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTC
genomic: GTCCAACATATACTTCAGTGCTCAATCATATTCGAATATACTTGCCTGAGgtacaataat ... tgaaatgcagTTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTC
ctgaaagatttgtagttgtgcaaatttattctaacttgcactttgtgaaatgcagTTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTCCAGCGGGACTTGTCATCACTTTGGGATATTGATCTAGGTGGGAAGGTAA
ttctaac putative branch site (score: 2)
aaatttattctaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctaactgcatcatttattttttcaatctacctcatttttttcctgaaagatttgtagttgtgcaaatttattctaacttgcactttgtgaaatgcagTTGTTCCCAAACCTCAACAAAGTTGTATTTCTTGATGATGACGTTGTTGTCCAGCGGGACTTGTCATCACTTTGGGATATTGATCTAGGTGGGAAGGTAA
- - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgca