1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tattaccctattaaacttggctaatgttttcattttacagaccattttcactgatccccgtgttttgcatgatatatatacaacacattgaatttttcagGTTCCTCCTCTTGGAGATTTGATACTTGAGAAGCTTGACGAAGTTGAAATCTCTGTGAAG
species | Oryza sativa |
transcript | LOC_Os12g38480.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACACGATGATCACCCAGAGCACGAGTTCTAAACCTATAACTATGTCTTCG GTTCCTCCTCTTGGAGATTTGATACTTGAGAAGCTTGACGAAGGTTGAAAT
genomic: ACACGATGATCA-GCAGAGCACGAGTTCTAAACCTATAACTATGTCTTCGgtatgtctat ... aatttttcagGTTCCTCCTCTTGGAGATTTGATACTTGAGAAGCTTGACGAA-GTTGAAAT
tttcactgatccccgtgttttgcatgatatatatacaacacattgaatttttcagGTTCCTCCTCTTGGAGATTTGATACTTGAGAAGCTTGACGAAGTTGAAATCTCTGTGAAG
cactgat putative branch site (score: 3)
tttttc putative PPT
atgatatatatacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaccctattaaacttggctaatgttttcattttacagaccattttcactgatccccgtgttttgcatgatatatatacaacacattgaatttttcagGTTCCTCCTCTTGGAGATTTGATACTTGAGAAGCTTGACGAAGTTGAAATCTCTGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - -gctaatg
- - - - - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - ctgatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaca