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...gtaagccattaattgactgattcattcttgttgaatgtgattcccaaaaagtatgaaattattttattgatagatccacttgcatttatcttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAAAACTGCCATCCACCAAGAATGAAGCCGTTGTCCAAGCTGATTTGGCAG
species | Oryza sativa |
transcript | LOC_Os12g37960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAG GTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAEST: gi|29684086|gb|CB680361.1|CB680361
genomic: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAGgtaaatgcct ... ttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
EST: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAG GTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAEST: gi|58686153|gb|CK074840.1|CK074840
genomic: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAGgtaaatgcct ... ttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
EST: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAG GTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAEST: gi|41882056|gb|BX927725.1|BX927725
genomic: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAGgtaaatgcct ... ttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
EST: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAG GTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAEST: gi|33676241|gb|CF304480.1|CF304480
genomic: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAGgtaaatgcct ... ttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
EST: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAG GTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAEST: gi|33796423|gb|CF324078.1|CF324078
genomic: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAGgtaaatgcct ... ttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
EST: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAG GTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
genomic: TTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGATGGCAAGgtaaatgcct ... ttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACA
aaaaagtatgaaattattttattgatagatccacttgcatttatcttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAAAACTGCCATCCACCAAGAATGAAGCCGTTGTCCAAGCTGATTTGGCAG
tattgat putative branch site (score: 34)
tttatctt putative PPT
tatgaaattattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccattaattgactgattcattcttgttgaatgtgattcccaaaaagtatgaaattattttattgatagatccacttgcatttatcttgttcacagGTAAAGGTTGATATGGGCCAGCCCATTCTCTCTGGACCAGATATTCCAACAAAACTGCCATCCACCAAGAATGAAGCCGTTGTCCAAGCTGATTTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - -tgattca
- - - - - - - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - -tgtgatt
- - - - - - - - - - - - - - - - - - - - - cccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttgca