1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataacaactaatggcagatgtgtgtccggctgattaattgttgttttcccctttggcatgcaacaagtctttaatgatgttgcttctggctgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGACCCATTGATTTTGGAGTTCCAATTCCGGCTGGTGTGGAGGTTGAGACTT
species | Oryza sativa |
transcript | LOC_Os12g31380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGAEST: gi|86888035|gb|CI297852.1|CI297852
genomic: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
EST: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGAEST: gi|86598404|gb|CI355021.1|CI355021
genomic: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
EST: TGAACAAACCTCTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACCCCTATATCCCTTGGACCAGAAGGACATGACACCAGCTCACCGAEST: gi|88986598|gb|CI033741.1|CI033741
genomic: TGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
EST: TCGCTCACAGTATGAACCAACCTGTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGAEST: gi|88263354|gb|CI367128.1|CI367128
genomic: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
EST: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGAEST: gi|6012873|gb|AU078690.1|AU078690
genomic: TCGCTCACAGTATGAACAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
EST: CAAACCTGTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGAEST: gi|86843458|gb|CI339532.1|CI339532
genomic: CAAACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
EST: AACCTGTTTATGTGGCTGCTGAAAGTTACAAG TTTGCACGCCTATATCCCTTGGACCAGAAGGACATGACACCAGCTCACCGA
genomic: AACCTGTTTATGTGGCTGCTGAAAGTTACAAGgtaataacat ... tgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGA
ttcccctttggcatgcaacaagtctttaatgatgttgcttctggctgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGACCCATTGATTTTGGAGTTCCAATTCCGGCTGGTGTGGAGGTTGAGACTT
ctttaat putative branch site (score: 9)
ctgtttt putative PPT
tttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataacaactaatggcagatgtgtgtccggctgattaattgttgttttcccctttggcatgcaacaagtctttaatgatgttgcttctggctgttttgtagTTTGCACGCCTATATCCGTTGGACCAGAAGGACATGACACCAGCTCACCGACCCATTGATTTTGGAGTTCCAATTCCGGCTGGTGTGGAGGTTGAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - caactaa
- - - - - - -gcagatg
- - - - - - - - - - tgtgtcc
- - - - - - - - - - - - - - gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct