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gtctggaactatggccttttcaagcatgtactgtaacgtttcatgttcggatgactgaattgatttcgttgaattgtagCTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAATCTGCCTTCATTTGCTAATAAG
species | Oryza sativa |
transcript | LOC_Os12g29550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGCCTAAG CTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAATEST: gi|428176|gb|D24324.1|D24324
genomic: AATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGCCTAAGgtctggaact ... tgaattgtagCTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAAT
EST: AAAGTTGATGAGCCTAAG CTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAATEST: gi|29621564|gb|CB626575.1|CB626575
genomic: AAAGTTGATGAGCCTAAGgtctggaact ... tgaattgtagCTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAAT
EST: AATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGCCTAAG CTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAAT
genomic: AATCTGGAAAATATCTTCTAAACCTTCCCATAAAAGTTGATGAGCCTAAGgtctggaact ... tgaattgtagCTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAAT
catgtactgtaacgtttcatgttcggatgactgaattgatttcgttgaattgtagCTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAATCTGCCTTCATTTGCTAATAAG
tttcgtt CT-rich tract
aattgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggaactatggccttttcaagcatgtactgtaacgtttcatgttcggatgactgaattgatttcgttgaattgtagCTAGACAGTAAGCTGTTGTCAACATACTTTAAAGAGCATCCACATGATAATCTGCCTTCATTTGCTAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA