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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagattcgagtcgagtcgagcagatttcttgggtcgggttgggttctaccacctctaattgctagttgatatataattcaattttcttggtttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCGTTCAAGTTCCACCCCACAAAAGAACTGCCTACGAATTCTGATGGAATAA

Basic information

species Oryza sativa
transcript LOC_Os12g26290.5
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g26290.6 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G312997_T01 (Zea mays), 3'ss of exon 3
--------cagatt-cgagtcgagtcgagcagatttcttgggtcgggttgggttctaccacctctaattgctagttgatatataattcaattttcttggtttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCGTTCAAGTTCCACCCCACAAAAGAACTGCCTACGAATTCTGATGGAATAA
        | |||| |||||| |||||||||  |||||         | ||| ||  |||| |||||| | ||||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||| |||||||||||| |||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||||||| ||
ggtcgggtcggatttcgagtcaagtcgagcaattttct--------atcgggctcatccacatctaatag-tagttgatatataattcgatttccttggtttcttccagATTGAAATCACAGCTCCAAACGAAGTGGCCAATAAGTGCCCACTCAAATCATTCAAGTTCTATGCCACAAAAGAACTGCCTACGAATTCTGATGGAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614999|gb|CB620012.1|CB620012
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29625915|gb|CB630926.1|CB630926
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29673746|gb|CB670021.1|CB670021
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29627764|gb|CB632775.1|CB632775
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29673709|gb|CB669984.1|CB669984
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29613656|gb|CB618669.1|CB618669
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|33676616|gb|CF304855.1|CF304855
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCA
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCA
EST: gi|29623660|gb|CB628671.1|CB628671
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29626272|gb|CB631283.1|CB631283
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29622413|gb|CB627424.1|CB627424
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29674051|gb|CB670326.1|CB670326
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29622490|gb|CB627501.1|CB627501
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29625519|gb|CB630530.1|CB630530
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29625911|gb|CB630922.1|CB630922
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29625830|gb|CB630841.1|CB630841
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29613620|gb|CB618633.1|CB618633
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29614956|gb|CB619969.1|CB619969
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29620729|gb|CB625740.1|CB625740
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29626293|gb|CB631304.1|CB631304
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|88572787|gb|CI664358.1|CI664358
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29679634|gb|CB675909.1|CB675909
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29623589|gb|CB628600.1|CB628600
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|25778063|gb|CA752815.1|CA752815
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGGCAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29613584|gb|CB618597.1|CB618597
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29677261|gb|CB673536.1|CB673536
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29627804|gb|CB632815.1|CB632815
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29626125|gb|CB631136.1|CB631136
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29628820|gb|CB633831.1|CB633831
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29624043|gb|CB629054.1|CB629054
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|25778087|gb|CA752839.1|CA752839
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGGCAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29627901|gb|CB632912.1|CB632912
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29628685|gb|CB633696.1|CB633696
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29628226|gb|CB633237.1|CB633237
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29625787|gb|CB630798.1|CB630798
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|25778064|gb|CA752816.1|CA752816
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGGCAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29627802|gb|CB632813.1|CB632813
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29623658|gb|CB628669.1|CB628669
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|88302021|gb|CI667867.1|CI667867
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29627242|gb|CB632253.1|CB632253
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29612897|gb|CB617910.1|CB617910
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29627625|gb|CB632636.1|CB632636
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29623848|gb|CB628859.1|CB628859
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29622060|gb|CB627071.1|CB627071
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
EST: gi|29629207|gb|CB634218.1|CB634218
EST:     TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAG                         ATTGAAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG
genomic: TACAGTTCATGGTTCATGACTGGATGGATCATATGGAGGATACCGGACAGgtgcatgctt ... tttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaccacctctaattgctagttgatatataattcaattttcttggtttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCGTTCAAGTTCCACCCCACAAAAGAACTGCCTACGAATTCTGATGGAATAA
                                    ttttcttggtttcttc  CT-rich tract
                 tagttgatatataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagattcgagtcgagtcgagcagatttcttgggtcgggttgggttctaccacctctaattgctagttgatatataattcaattttcttggtttcttctagATTGGAATCACAGCTCCAAAAGAAGTGGCCAATGAGTGCCCACTCAAATCGTTCAAGTTCCACCCCACAAAAGAACTGCCTACGAATTCTGATGGAATAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA