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gtaatttcaattgatgtatagttattttttctttatcaaattcaattgatgtatagttgttctgctattgttgagctgcttgtttatcgtgtttgattgtaatctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATCTCAAGGAGCTGGTGTCAAAATTCATTCCTGAGGTGATTGGGAAGGAAA
species | Oryza sativa |
transcript | LOC_Os12g21798.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGATTCGACAG ATCCCTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|33795240|gb|CF323492.1|CF323492
genomic: CAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGAEST: gi|86512807|gb|CI155440.1|CI155440
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGA
EST: CAAATCAAGTCGAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|88975405|gb|CI023656.1|CI023656
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|58684406|gb|CK073093.1|CK073093
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGEST: gi|88199744|gb|CI199594.1|CI199594
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTG
EST: GCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|117216849|gb|CT845233.1|CT845233
genomic: GCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|86523196|gb|CI163402.1|CI163402
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: AAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|218498217|gb|FG958345.1|FG958345
genomic: AAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAAEST: gi|58670980|gb|CK059666.1|CK059666
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAA
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTEST: gi|86494351|gb|CI136984.1|CI136984
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|66918188|gb|CX105036.1|CX105036
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: GCAAGCCAGATTCGACAG ATCCGTCGCAAGATGCTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|88832344|gb|CI019285.1|CI019285
genomic: GCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|11173097|gb|AU164611.1|AU164611
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|87032424|gb|CI264205.1|CI264205
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|86261132|gb|CI004697.1|CI004697
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|88240992|gb|CI240841.1|CI240841
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATEST: gi|38473073|gb|CF957205.1|CF957205
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
EST: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAG ATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
genomic: CAAATCAAGTCAAACGGACATGCTATGCTCAAGCAAGCCAGATTCGACAGgtaatttcaa ... atctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGAT
ttgttctgctattgttgagctgcttgtttatcgtgtttgattgtaatctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATCTCAAGGAGCTGGTGTCAAAATTCATTCCTGAGGTGATTGGGAAGGAAA
gtttgat putative branch site (score: 36)
ttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttcaattgatgtatagttattttttctttatcaaattcaattgatgtatagttgttctgctattgttgagctgcttgtttatcgtgtttgattgtaatctgtgcagATCCGTCGCAAGATGGTGGAGATCATGGTGAACCAGGCATCATCCTGTGATCTCAAGGAGCTGGTGTCAAAATTCATTCCTGAGGTGATTGGGAAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA