1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cacatcatcaattgtgcataaatcagttctgctcttttgcacatgtgcgataacatgctgtatatattaaatgtctcacatttgtgctatgccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA
species | Oryza sativa |
transcript | LOC_Os12g19350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGACC-AGCTACAAACCTGAAAGGAGAACAG GTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGEST: gi|218496318|gb|FG954188.1|FG954188
genomic: CTTGACCAAGCTACAAACCTGAAAGGAGAACAGgtttcaactt ... gccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTG
EST: CATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAG GTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGEST: gi|88296152|gb|CI667542.1|CI667542
genomic: CATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGgtttcaactt ... gccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTG
EST: CATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAG GTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGEST: gi|29685641|gb|CB681916.1|CB681916
genomic: CATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGgtttcaactt ... gccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTG
EST: CATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAG GTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTG
genomic: CATCTATGAGGAGCCAACTTGACCAAGCTACAAACCTGAAAGGAGAACAGgtttcaactt ... gccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTG
tgcgataacatgctgtatatattaaatgtctcacatttgtgctatgccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA
gtctcac putative branch site (score: 49)
ccatttc putative PPT
tgtatatattaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatcatcaattgtgcataaatcagttctgctcttttgcacatgtgcgataacatgctgtatatattaaatgtctcacatttgtgctatgccatttcagGTTGCAGCTAAGGTCAAATCAGACGAAGAAAAAGATGAATGGTTTGTGGTGAAGGTGATACATTTCGATAAGGAAACAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - -gtgcata
- - - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - - -catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtgc