1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcatatttgctacaccatgaatagtaataatccactacttgacaccttccataaaccagccttagctctaatactttgcttgtatttgaaatatttcagTCATGAAGAAATCGATGTTAGCCATCCTGATTTTTTTAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAG
species | Oryza sativa |
transcript | LOC_Os12g18200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCTTAATCTGGTGTGGAGACTTGAATGTCAG TCATGAAGAAATCGATGTTAGCCATCCTGANNNNNNNAGCAGTGCTAAACTEST: gi|27547884|gb|CA765936.2|CA765936
genomic: CCTTAATCTGGTGTGGAGACTTGAATGTCAGgtaattaata ... aatatttcagTCATGAAGAAATCGATGTTAGCCATCCTGATTTTTTTAGCAGTGCTAAACT
EST: GTTCAACAGGTAGACAAACCCTTAATCTGGTGTGGAGACTTGAATGTCAG TCATGAAGAAATCGATGTTAGCCATCCTGANNNNNNNAGCAGTGCTAAACTEST: gi|86494667|gb|CI137300.1|CI137300
genomic: GTTCAACAGGTAGACAAACCCTTAATCTGGTGTGGAGACTTGAATGTCAGgtaattaata ... aatatttcagTCATGAAGAAATCGATGTTAGCCATCCTGATTTTTTTAGCAGTGCTAAACT
EST: GTTCAACAGGTAGACAAACCCTTAATCTGGTGTGGAGACTTGAATGTCAG TCATGAAGAAATCGATGTTAGCCATCCTGANNNNNNNAGCAGTGCTAAACT
genomic: GTTCAACAGGTAGACAAACCCTTAATCTGGTGTGGAGACTTGAATGTCAGgtaattaata ... aatatttcagTCATGAAGAAATCGATGTTAGCCATCCTGATTTTTTTAGCAGTGCTAAACT
ccttccataaaccagccttagctctaatactttgcttgtatttgaaatatttcagTCATGAAGAAATCGATGTTAGCCATCCTGATTTTTTTAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAG
ctctaat putative branch site (score: 3)
ttgtatttgaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcatatttgctacaccatgaatagtaataatccactacttgacaccttccataaaccagccttagctctaatactttgcttgtatttgaaatatttcagTCATGAAGAAATCGATGTTAGCCATCCTGATTTTTTTAGCAGTGCTAAACTCAATGGATACATCCCTCCAAATAAAGAG
- - - - tgctaca
- - - - - - - - catgaat
- - - - - - - - - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcttg