1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tttcctgcactgttgtcttttaatatactatgtctataatcgcccagtacatatccttgctctaaggaggatatggtttctaactaacttaccaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCTGTCGCCAG
species | Oryza sativa |
transcript | LOC_Os12g10784.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAACAACATATGACCTTCCAGTGGTCACTGATGTGCATGAAAGCCACCAG TGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCEST: gi|88332901|gb|CI639749.1|CI639749
genomic: AAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAGgtatcagttg ... accaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTC
EST: AAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAG TGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCEST: gi|41883464|gb|BX928437.1|BX928437
genomic: AAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAGgtatcagttg ... accaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTC
EST: AAGCAACATATGACCTTCCAGTGGTCACTGATGTGCATGAAAGCCACCAG TGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCEST: gi|58681266|gb|CK069953.1|CK069953
genomic: AAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAGgtatcagttg ... accaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTC
EST: AAGCAACATATGACCTTCCAGTGGTCACTGATGTGCATGAAAGCCACCAG TGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCEST: gi|11442603|gb|BF430506.1|BF430506
genomic: AAGCAACATATGACATTCCAGTGGTCACTGATGTGCATGAAAGCCACCAGgtatcagttg ... accaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTC
EST: GCATGAAAGCCACCAG TGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTC
genomic: GCATGAAAGCCACCAGgtatcagttg ... accaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTC
agtacatatccttgctctaaggaggatatggtttctaactaacttaccaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCTGTCGCCAG
aaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctgcactgttgtcttttaatatactatgtctataatcgcccagtacatatccttgctctaaggaggatatggtttctaactaacttaccaaattagTGTGAAGCCGTTGGAAGAGTGGCCGACATCATACAAATTCCAGCTTTCCTCTGTCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- tcctgca
- - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaac