Sequence
atgc intronic sequence ATGC exonic sequencegtacaggattcatatttggtttgttttatttgtatttataacatccggttggaatgcttcataaaatttagtgtaatagtgcaacatttgttttgtgcagGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGC
Basic information
species | Oryza sativa |
transcript | LOC_Os12g09000.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os12g09000.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G401934_T04 (Zea mays), 3'ss of exon 4
gtacaggattcatatttggtttgttttatttgtattta---taacatccggttggaatgct---------------tcataaaatttagtgtaatagtgcaacatttgttttgtgcagGGATGAATTATTTGCTATGGCTGATATAGTCAC-CCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGC
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gtacaagatcaatgtttgttttgttccgtatgcatttgagttcttgttggattgtattgctgtttcattgtcaatactgtagtacttatggacatgatcttgcaattgttatgagcagGGATGAACTATTTTCTATGGCTGATATAGTCACTCCCAAATGTGAAAGAAGCATCTAAGTTACTTGGTGATGTATCATTGCATACAATTTCTGACATGTG-
upper sequence: LOC_Os12g09000.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G401934_T03 (Zea mays), 3'ss of exon 4
gtacaggattcatatttggtttgttttatttgtattta---taacatccggttggaatgct---------------tcataaaatttagtgtaatagtgcaacatttgttttgtgcagGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGC
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gtacaagatcaatgtttgttttgttccgtatgcatttgagttcttgttggattgtattgctgtttcattgtcaatactgtagtacttatggacatgatcttgcaattgttatgagcagGGATGAACTATTTTCTATGGCTGATATAGTCACT------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58672196|gb|CK060882.1|CK060882EST: TCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAG GGATGAATTATTTGCTATGGCTGAT
genomic: TCCACAAGTGGAGATACTCTTTCAGAATCATCTACTCTCTCTGTATATAGgtacaggatt ... ttttgtgcagGGATGAATTATTTGCTATGGCTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cggttggaatgcttcataaaatttagtgtaatagtgcaacatttgttttgtgcagGGATGAATTATTTGCTATGGCTGATATAGTCACCCCAAATGTGAAAGAAGCGTCGAGATTACTTGGGGGTGTATCTTTGCGCACTGTTTCTGACATGCGC
tttgtttt CT-rich tract
ttcataaaatttagtg TA-rich tract