1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tccttgcagatgcttatctttctcttattagtgaattgaattctctaattagggaattgaattctctaattaacttgtgggtactacctttttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTTAGCCATTCTGATGGAAATCTGTATGTGTACGATAAA
species | Oryza sativa |
transcript | LOC_Os12g07450.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTEST: gi|29665681|gb|CB661956.1|CB661956
genomic: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGT
EST: CGGCCCAACATTACAACAAGAGGTGATAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTAGTTGEST: gi|33687920|gb|CF316159.1|CF316159
genomic: CGGCCCAACATTACAACAAG-GGTGATAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTT-GTTG
EST: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTNTGTTGTEST: gi|58684188|gb|CK072875.1|CK072875
genomic: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGT
EST: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTEST: gi|66927819|gb|CX114667.1|CX114667
genomic: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGT
EST: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTEST: gi|218478110|gb|FG955323.1|FG955323
genomic: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGT
EST: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTEST: gi|58685449|gb|CK074136.1|CK074136
genomic: GCGGCCCAACATTACAACAAGGGTGATAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGT
EST: TAAAGATGGAACAAGCACTGGCAG CCGATGCACTTCTGTTGCATGGGTACCGGAGCGGGAAGGAATC-TTGTTGT
genomic: TAAAGATGGAACAAGCACTGGCAGgcatgtttaa ... tttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGT
taattagggaattgaattctctaattaacttgtgggtactacctttttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTTAGCCATTCTGATGGAAATCTGTATGTGTACGATAAA
aattaac putative branch site (score: 2)
tactaccttttttt putative PPT
aattctctaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttgcagatgcttatctttctcttattagtgaattgaattctctaattagggaattgaattctctaattaacttgtgggtactacctttttttggcagCCGATGCACTTCTGTTGCATGGGTACCGGAGCGTGAAGGAATCTTTGTTGTTAGCCATTCTGATGGAAATCTGTATGTGTACGATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA