1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgcccaagcccacctgtttttccagtgttctcattttggaatatctttatgctacaaatttgccttttacttccaggactcatgttggcaattacttcatgatacacataccatgtgaaatatcagttaactgtattttctgcaaataaactaacatatactaaaaatgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGACCATTGTGCCTGAAATTGGTAAAAAGGATGTATACCTGGCCTACCTGC
species | Oryza sativa |
transcript | LOC_Os12g07110.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAG GGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGEST: gi|29675500|gb|CB671775.1|CB671775
genomic: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAGgtttgcccaa ... tgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
EST: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAG GGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGEST: gi|86829547|gb|CI286740.1|CI286740
genomic: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAGgtttgcccaa ... tgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
EST: GTATAC-AGCGGTAGCACCGGATTGCCTAAG GGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGEST: gi|29672200|gb|CB668475.1|CB668475
genomic: GTATACAAGCGGTAGCACCGGATTGCCTAAGgtttgcccaa ... tgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
EST: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAT GGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGEST: gi|29672201|gb|CB668476.1|CB668476
genomic: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAGgtttgcccaa ... tgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
EST: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAG GGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGEST: gi|29614945|gb|CB619958.1|CB619958
genomic: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAGgtttgcccaa ... tgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
EST: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAG GGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
genomic: CTGACGTAGCAGTGATAATGTATACAAGCGGTAGCACCGGATTGCCTAAGgtttgcccaa ... tgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATG
tcagttaactgtattttctgcaaataaactaacatatactaaaaatgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGACCATTGTGCCTGAAATTGGTAAAAAGGATGTATACCTGGCCTACCTGC
tactaaa putative branch site (score: 14)
aaataaactaacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcccaagcccacctgtttttccagtgttctcattttggaatatctttatgctacaaatttgccttttacttccaggactcatgttggcaattacttcatgatacacataccatgtgaaatatcagttaactgtattttctgcaaataaactaacatatactaaaaatgttttatagGGAGTAATGATGACCCATCGGAACGTCCTGGCTACACTTTCAGCAGTTATGACCATTGTGCCTGAAATTGGTAAAAAGGATGTATACCTGGCCTACCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG