1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagattgccattgcctcttgtactcttctgaattctgaagagttatcatgttttgctgaccatttcttgtcaaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAACGGTGGCACTATCGCCGACAAGGTGGACTATGGCTACAAGT
species | Oryza sativa |
transcript | LOC_Os12g07010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGANAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTNATGGAGATCEST: gi|66914330|gb|CX101178.1|CX101178
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|700083|gb|D46374.1|D46374
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58606449|gb|CK034482.1|CK034482
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTGCGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58681074|gb|CK069761.1|CK069761
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58652963|gb|CK041643.1|CK041643
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGEST: gi|29643121|gb|CB648128.1|CB648128
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATG
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|2428123|gb|C72586.1|C72586
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: GAAGATGAAGAAGTACGNATCTATTGTTCGTGTTATTTGCCCACACTCAG ATCAGAAAGATGAAGGGNTTTAAGCAGAGGA-GGCTCACCTCATGGEST: gi|29660813|gb|CB657088.1|CB657088
genomic: -AAGATGAAGAAGTACGCATCTATTGTTCGTGTTATT-GCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGG
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|29680798|gb|CB677073.1|CB677073
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33682543|gb|CF310782.1|CF310782
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAGAGATGEST: gi|218495500|gb|FG951241.1|FG951241
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATG
EST: CGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218493886|gb|FG946859.1|FG946859
genomic: CGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58663821|gb|CK052507.1|CK052507
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58611003|gb|CK038715.1|CK038715
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGEST: gi|33793525|gb|CF322646.1|CF322646
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAG
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|14192019|gb|AU184230.1|AU184230
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33685065|gb|CF313304.1|CF313304
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33655921|gb|CF278535.1|CF278535
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCEST: gi|58603191|gb|CK013719.1|CK013719
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCCGAAGAAGGCTCACCTCATGGAGATCEST: gi|218501376|gb|FG950516.1|FG950516
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCAEST: gi|3107792|gb|D43532.1|D43532
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCA
EST: CCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33808500|gb|CF330137.1|CF330137
genomic: CCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCATAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58683823|gb|CK072510.1|CK072510
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGGTCACCTCATGGAGATCEST: gi|287230|gb|D16034.1|D16034
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33810802|gb|CF331292.1|CF331292
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGEST: gi|58604432|gb|CK014960.1|CK014960
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAG
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|58585664|gb|CF983972.1|CF983972
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: GAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAGGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218480893|gb|FG950408.1|FG950408
genomic: GAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|117251520|gb|CT844200.1|CT844200
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|218485951|gb|FG959525.1|FG959525
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAA-AAGGCTCACCTCATGGAGATCEST: gi|58682184|gb|CK070871.1|CK070871
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|33806231|gb|CF328996.1|CF328996
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCEST: gi|700801|gb|D47092.1|D47092
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
EST: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAG ATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
genomic: AGAAGATGAAGAAGTACGCATCTATTGTTCGTGTTATTGCCCACACTCAGgtgagattgc ... caaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATC
ttctgaattctgaagagttatcatgttttgctgaccatttcttgtcaaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAACGGTGGCACTATCGCCGACAAGGTGGACTATGGCTACAAGT
tgctgac putative branch site (score: 217)
tttcttgtc putative PPT
tcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattgccattgcctcttgtactcttctgaattctgaagagttatcatgttttgctgaccatttcttgtcaaaattcagATCAGAAAGATGAAGGGCTTGAAGCAGAAGAAGGCTCACCTCATGGAGATCCAGATCAACGGTGGCACTATCGCCGACAAGGTGGACTATGGCTACAAGT
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