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gtaagaattggttcctggatatatatgtcattattgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA
species | Oryza sativa |
transcript | LOC_Os12g04990.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|88569586|gb|CI660761.1|CI660761
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTACATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGAEST: gi|29667939|gb|CB664214.1|CB664214
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGA
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|88372758|gb|CI612686.1|CI612686
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTEST: gi|29626657|gb|CB631668.1|CB631668
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACT
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|29627108|gb|CB632119.1|CB632119
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|29630786|gb|CB635795.1|CB635795
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|29627343|gb|CB632354.1|CB632354
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|29674287|gb|CB670562.1|CB670562
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|58658513|gb|CK047193.1|CK047193
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|33801569|gb|CF326656.1|CF326656
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGEST: gi|117224882|gb|CT845959.1|CT845959
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
EST: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGA CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
genomic: GACTGTAGATACCTGGGCACAAGAGTCTGTGTTGATGGAACAGTTGGGGAgtaagaattg ... attgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGG
ttgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA
tttgttaaaatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattggttcctggatatatatgtcattattgccttttgtagctttgttaaaatcttttaaatgatatatatgaattgttgcagCTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA