1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacttgtattgcaaaattcattgcagaacaaaaacacgataaaattggtagcagttcaagttcaaatagctaacctttatcactcaatttggagttgcagCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGA
species | Oryza sativa |
transcript | LOC_Os12g04020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAG CTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGEST: gi|58682225|gb|CK070912.1|CK070912
genomic: TATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGgtaattactt ... ggagttgcagCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTG
EST: TATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAG CTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTACCAGATGTG
genomic: TATCAGTAGTTGAAGCCACAAGTTTTGTGTCCCCAAAATGGGTGCCACAGgtaattactt ... ggagttgcagCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTG
tggtagcagttcaagttcaaatagctaacctttatcactcaatttggagttgcagCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGA
agctaac putative branch site (score: 7)
ttcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttgtattgcaaaattcattgcagaacaaaaacacgataaaattggtagcagttcaagttcaaatagctaacctttatcactcaatttggagttgcagCTAGCAGATGCAAAGGATGTGGTTGAAGGGATTAAGCATGTGCCAGATGTGCGGTTTCCAGTGTTAACTCCTAACCTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - ttgcaaa
- - - - - - - - - cattgca
- - - - - - - - - - - - -gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - -gtagcag