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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactatggtacctttcctaaaatattgacaggaatgtatccatggcatatggcatttactttgtagtctgttccatctgctaaacaatttttaacctgtctttgaatctatacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGTTACCACAAGATTTCTTCTTGGTGCTCTGAATGGATTGCTTGCACCAATA

Basic information

species Oryza sativa
transcript LOC_Os12g03860.7
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33795182|gb|CF323464.1|CF323464
EST:     GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
EST: gi|33677540|gb|CF305779.1|CF305779
EST:     GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGT                         CATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT
genomic: GCAGATCGTATTGGCCGTAAGCCTGTCATTATCTTTTCCATTTTTGCAGTgtaagcacta ... atacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtctgttccatctgctaaacaatttttaacctgtctttgaatctatacttccagCATTGTGCTCAATACTTTGTTTGGATTAAGTGTGAAGTACTGGATGGCTGTTACCACAAGATTTCTTCTTGGTGCTCTGAATGGATTGCTTGCACCAATA
                        ttttaac  putative branch site (score: 2)
                                              tacttcc  putative PPT
                taaacaatttttaa  TA-rich tract