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...atgtcaaaattattgctagatcaagtaatttatattatgatgctgtttcaatttttcaatgcttcagttgaaactgactgataacttattgttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG
species | Oryza sativa |
transcript | LOC_Os12g03060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|86904894|gb|CI310687.1|CI310687
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|33653554|gb|CF276168.1|CF276168
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: GGATCATGCAAAGAG-GTTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAGCTTTAGTAEST: gi|58668824|gb|CK057510.1|CK057510
genomic: GGATCATGCAAAGAGTGTT-GATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|29657293|gb|CB653568.1|CB653568
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|66920771|gb|CX107619.1|CX107619
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|88356178|gb|CI627626.1|CI627626
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCGTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|25798686|gb|CA754647.1|CA754647
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|27576657|gb|CA999351.1|CA999351
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|88402485|gb|CI596346.1|CI596346
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAEST: gi|29686826|gb|CB683101.1|CB683101
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|58597158|gb|CK007686.1|CK007686
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAEST: gi|88337316|gb|CI629606.1|CI629606
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTA
EST: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAG CTACAATCATCAGACATTTCTAAAGAAAAGCAAG
genomic: AGGATCATGCAAAGAGTGTTGATGTTGCAGTTCTTTTTCTTGGCTCGAAGgtacttattg ... gttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAG
tttcaatttttcaatgcttcagttgaaactgactgataacttattgttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG
tgataac putative branch site (score: 58)
ttgttcct putative PPT
atttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtcaaaattattgctagatcaagtaatttatattatgatgctgtttcaatttttcaatgcttcagttgaaactgactgataacttattgttcctgtagCTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - tattgct
- - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgactg