1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtaaatataggatgctttacaatgaataacaacattttaatggagctttagtctttctgatgtactatgtaatcttaagcactatgatgatctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAGCATAGCTCAATTTCAGAGTCTGTACCTCATGACAGTGCAGGATTTGAA
species | Oryza sativa |
transcript | LOC_Os12g01510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTT ATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAEST: gi|117240478|gb|CT842829.1|CT842829
genomic: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTTgtaagttatg ... atctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGA
EST: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTT ATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAEST: gi|29621673|gb|CB626684.1|CB626684
genomic: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTTgtaagttatg ... atctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGA
EST: ATTGGCAGAGTGTTCAACTT ATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAEST: gi|29623656|gb|CB628667.1|CB628667
genomic: ATTGGCAGAGTGTTCAACTTgtaagttatg ... atctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGA
EST: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTT ATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAEST: gi|11442867|gb|BF430766.1|BF430766
genomic: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTTgtaagttatg ... atctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGA
EST: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTT ATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGA
genomic: TCTTTGTCAAATTGGGGAGAAGGGAAGCTCATTGGCAGAGTGTTCAACTTgtaagttatg ... atctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGA
gctttagtctttctgatgtactatgtaatcttaagcactatgatgatctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAGCATAGCTCAATTTCAGAGTCTGTACCTCATGACAGTGCAGGATTTGAA
ttctgat putative branch site (score: 3)
tctctgc putative PPT
taatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaaatataggatgctttacaatgaataacaacattttaatggagctttagtctttctgatgtactatgtaatcttaagcactatgatgatctctgcagATTACTCAAAGAGAACATGTTTGCCAGTGAAACACCATCTGAATCGAAAGAGCATAGCTCAATTTCAGAGTCTGTACCTCATGACAGTGCAGGATTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA