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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaatctaactagtagtgagtaaaatgctatggtctcacaatacacacagtcacttaagcacactgttttttgcatagGTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG

Basic information

species Oryza sativa
transcript LOC_Os11g36070.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g36070.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G104449_T02 (Zea mays), 3'ss of exon 4
gtatgaaatct--aactagtagtgagtaaaatgctatggtctcacaatacacacagtcacttaagcacactgttttttgcatagGTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG
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gtaaggaatttttaactatcagctagtcaaatactacaggttcaca-tactcaca----ctaaggcgcac--ctcttttcatagGTACATGTGTGTCATGGGAATCAACTTTATACAAAAAATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgctatggtctcacaatacacacagtcacttaagcacactgttttttgcatagGTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG
         gtctcac  putative branch site (score: 3)
                                        ctgtttttt  putative PPT
                                         tgtttttt  TA-rich tract